Header name for the simulated files. The default name is sim.
The simulated files will be named as study.map, study1.ped, study1.phe...
Folder name for storing the simulated files. The default name is sim.
The folder named test will be created under the same directory you are running SeqSIMLA. All of the simulated files will be placed in the folder.
The number of simulated replicates that will be generated.
5000 replicates of ped and phe files will be generated.
he number of default families that will be simulated in a replicate. SeqSIMLA can generate a three generation family structure as the default family structure.
The family structure is:
Individual 7 will be used as a proband.
500 families with the same structure shown in the figure above will be simulated in each replicate, where at least individual 7 is affected.
The numbers of cases and controls that will be simulated. The first number is for cases and the second number is for controls.
1000 cases and 2000 controls will be generated in each replicate.