Select sites


-site integer, integer,...

This option specifies the locations of the disease sites or the QTL for the first trait. Note that the locations are the order of the sites in the reference sequences, not the chromosomal positions.
For example,

-site 1,10,20

The first, 10th, and 20th sites as appeared in the reference sequences will be used as the disease loci or the QTL for the first trait.

-site2 integer,integer,...

Because SeqSIMLA can simulate two quantitative traits, the option specifies the locations of the QTL for the second trait.
For example,

-site2 30,32,35

The 30th, 32nd, and 35th sites as appeared in the reference sequences will be used as the QTL for the second trait.